Publications of G Rätsch

Rätsch, G.: A Brief Introduction into Machine Learning. In: 21C3 The Usual Aspects: 21st Chaos Communication Congress, pp. 82 - 87. 21C3 The Usual Aspects: 21st Chaos Communication Congress, Berlin, Germany, December 27, 2004 - December 29, 2004. Chaos Computer Club (2004)

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: a multifunctional workbench for RNA-seq data analysis. In BMC Bioinformatics, 15 (Supplement 13), A7. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany, July 19, 2013. BioMed Central (2014)

Schultheiss, S.; Jean, G.; Sreedharan, V.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Easier Workflows & Tool Comparison with Oqtans+. In Galaxy Community Conference 2012 (GCC 2012). Galaxy Community Conference 2012 (GCC 2012), Chacago, IL, USA, July 25, 2012 - July 27, 2012. (2012)

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011 at ISMB/ECCB 2011, Wien, Austria, July 15, 2011. BioMed Central (2011)

Behr, J.; Clark, J.; Drewe, P.; Hildebrand, K.; Kover, P.; Lyngsoe, R.; Mott, E.; Osborne, R.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Steffen, J.; Stegle, O.; Toomajian, C.; Xiangchao, G.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. In HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, p. 22. HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, Wien, Austria, July 15, 2011 - July 16, 2011. (2011)

Bohnert, R.; De Bona, F.; Rätsch, G.: Quantitatively deconvolving alternative RNA secondary structures. In HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, pp. 10 - 11. HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, Wien, Austria, July 15, 2011 - July 16, 2011. (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, p. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, June 22, 2011 - June 25, 2011. (2011)

Behr, J.; Bohnert, R.; Zeller, G.; Schweikert, G.; Hartmann, L.; Rätsch, G.: Next generation genome annotation with mGene.ngs. In BMC Bioinformatics, 11 (Supplement 10), O8. Sixth International Society for Computational Biology Student Council Symposium (ISCB 2010) , Boston, MA, USA, July 09, 2010. BioMed Central (2010)

Rätsch, G.: RGASP Evaluation of RNA-Seq Read Alignment Algorithms. In HiTSeq 2010: Conference on High Throughput Sequencing Analysis and Algorithms. HiTSeq 2010: Conference on High Throughput Sequencing Analysis and Algorithms, Boston, MA, USA , July 09, 2010 - July 10, 2010. (2010)

Schultheiss, S.; Münch, M.-C.; Andreeva, G.; Rätsch, G.: Long-term availability of bioinformatics web services. In Bioinformatics Open Source Conference 2010, p. 30. 11th Annual Bioinformatics Open Source Conference (BOSC 2010), Boston, MA, USA, July 09, 2010 - July 10, 2010. (2010)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Gehl, C.; Binder, A.; Franc, V.: SHOGUN: A Large Scale Machine Learning Toolbox. In The R User Conference 2010, useR! 2010, p. 154. International R User Conference (useR! 2010), Gaithersburg, MD, USA, July 21, 2010 - July 23, 2010. (2010)

Bohnert, R.; Behr, J.; Kahles, A.; Jean, G.; Raetsch, G.: Oonline transcriptome analysis http://galaxy.tuebingen.mpg.de. In 2010 Meeting on the Biology of Genomes, p. 257. 2010 Meeting on the Biology of Genomes, Cold Spring Harbor, NY, USA, May 11, 2010 - May 15, 2010. (2010)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. In BMC Bioinformatics, 10 (Supplement 13), O1. 5th International Society for Computational Biology Student Council (ISCB 2009), Stockholm, Sweden, June 27, 2009. BioMed Central (2009)

Rätsch, G.; Sonnenburg, S.; Ong, C.: Support Vector Machines and Kernels for Computational Biology. In 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), AM3. 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), Stockholm, Sweden, June 27, 2009 - July 02, 2009. (2009)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

De Bona, F.; Ossowski, S.; Schneeberger, K.; Rätsch, G.: Optimal spliced alignments of short sequence reads. In BMC Bioinformatics, 9 (Supplement 10), O7. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences. In 4th International Society for Computational Biology Student Council Symposium, 38, p. 22. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), p. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Zeller, G.; Eichner, J.; Sachsenberg, T.; Laubinger, S.; Weigel, D.; Rätsch, G.: Re-Annotating The Arabidopsis Transcriptome With Tiling Microarrays. In 4th International Society for Computational Biology Student Council Symposium, 32, p. 21. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)