Publications of G Rätsch

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Phillips, P.; Rätsch, G.: Ab-initio gene finding using machine learning. NIPS 2006 Workshop on New Problems and Methods in Computational Biology (MLCB 2006), Vancouver, BC, Canada (2006)

Rätsch, G.; Ong, C.: Kernel Methods for Predictive Sequence Analysis. German Conference on Bioinformatics (GCB 2006), Tübingen, Germany (2006)

Rätsch, G.; Ong, C.: Kernel Methods for Predictive Sequence Analysis. German Conference on Bioinformatics (GCB 2006), Tübingen, Germany (2006)

Rätsch, G.; Sonnenburg, S.; Ong, C.; Schölkopf, B.: Accurate prediction of alternative splicing events. NIPS Workshop on Computational Biology and the Analysis of Heterogeneous Data (MLCB 2005), Whistler, BC, Canada (2005)

Görnitz, N.; Zeller, G.; Behr, J.; Kahles, A.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTIM: A Margin-based Transcript Identification Method. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany (2014)

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: a multifunctional workbench for RNA-seq data analysis. 14th Annual Bioinformatics Open Source Conference (BOSC 2013), Berlin, Germany (2013)

Rätsch, G.; Gan, X.; Stegle, O.; Behr, J.; Drewe, P.; Drewe, P.; Steffen, J.; Clark, R.; Osborne, E.; Schultheiss, S. et al.; Sreedharan, V.; Kahles, A.; Bohnert, R.; Jean, G.; Hildebrand, K.; Toomajian, C.; Lyngsoe, R.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, E.; Kover, P.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2012), Long Beach, CA, USA (2012)

Behr, J.; Bohnert, R.; Kahles, A.; Schweikert, G.; Zeller, G.; Hartmann, L.; Rätsch, G.: Accurate RNA-seq based de novo annotation using mGene.ngs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria (2011)

Jean, G.; Raetsch, G.; Kahles, A.; Sonnenburg, S.; Schneeberger, K.; Hagmann, J.; De Bona, F.; Weigel, D.: Fast and Accurate RNA-Seq alignments with PALMapper. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Drewe, P.; Stegle, O.; Behr, J.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical tests for detecting differential RNA-transcript expression. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Kahles, A.; Bohnert, R.; Ribeca, P.; Behr, J.; Rätsch, G.: RGASP evaluation of RNA-Seq read alignment algorithms. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Reinke, V.; Ewing, B.; Gerstein, M.; Green, P.; Henz, S.; High, A.; Hillier, L.; Kato, M.; Leng, J.; MacCoss, M. et al.; Merrihew, G.; Miller, D.; Rätsch, G.; Robilotto, R.; Slack, F.; Spencer, W.; Strasbourger, P.; Thompson, O.; Wang, G.; Zeller, G.; Waterston, R.: The C. elegans transcriptome. 18th International C. Elegans Meeting, Los Angeles, CA, USA (2011)

Steffen, J.; Behr, J.; Drewe, P.; Hillebrand, K.; Kover, P.; Lyngsoe, R.; Mott, R.; Osborne, E.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Stegle, O.; Toomajin, C.; Xiangchao, G.; Clark, R.: Extensive Genomic and Transcriptomic Variation in the 19 Founders of the Arabidopsis MAGIC Lines. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Behr, J.; Zeller, G.; Schweikert, G.; Hartmann, L.; Smith, L.; Rätsch, G.: De Novo RNA-seq-based genome annotation. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Kahles, A.; Bohnert, R.; Ribeca, P.; Behr, J.; Rätsch, G.: RGASP evaluation of RNA-Seq read alignment algorithms. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Bohnert, R.; Behr, J.; Kahles, A.; Jean, G.; Rätsch, G.: Online Quantitative Transcriptome Analysis. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Kahles, A.; Behr, J.; Bohnert, R.; Rätsch, G.: An Accuracy Evaluation of Read Alignment Algorithms. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)