Publications of G Zeller

Behr, J.; Bohnert, R.; Zeller, G.; Schweikert, G.; Hartmann, L.; Rätsch, G.: Next generation genome annotation with mGene.ngs. In BMC Bioinformatics, 11 (Supplement 10), O8. Sixth International Society for Computational Biology Student Council Symposium (ISCB 2010) , Boston, MA, USA, July 09, 2010. BioMed Central (2010)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), p. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Zeller, G.; Eichner, J.; Sachsenberg, T.; Laubinger, S.; Weigel, D.; Rätsch, G.: Re-Annotating The Arabidopsis Transcriptome With Tiling Microarrays. In 4th International Society for Computational Biology Student Council Symposium, 32, p. 21. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. (2008)

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.: mGene: A Novel Discriminative Ab-initio Gene Finding System. In Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, pp. 36 - 37. Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, Wien, Austria, July 19, 2007 - July 20, 2007. (2007)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Shin, P.; Frazer, K.; Ecker, J.; Weigel, D.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, Canada (2007)

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Phillips, P.; Rätsch, G.: Ab-initio gene finding using machine learning. NIPS 2006 Workshop on New Problems and Methods in Computational Biology (MLCB 2006), Vancouver, BC, Canada (2006)

Görnitz, N.; Zeller, G.; Behr, J.; Kahles, A.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTIM: A Margin-based Transcript Identification Method. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany (2014)

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: a multifunctional workbench for RNA-seq data analysis. 14th Annual Bioinformatics Open Source Conference (BOSC 2013), Berlin, Germany (2013)

Behr, J.; Bohnert, R.; Kahles, A.; Schweikert, G.; Zeller, G.; Hartmann, L.; Rätsch, G.: Accurate RNA-seq based de novo annotation using mGene.ngs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria (2011)

Reinke, V.; Ewing, B.; Gerstein, M.; Green, P.; Henz, S.; High, A.; Hillier, L.; Kato, M.; Leng, J.; MacCoss, M. et al.; Merrihew, G.; Miller, D.; Rätsch, G.; Robilotto, R.; Slack, F.; Spencer, W.; Strasbourger, P.; Thompson, O.; Wang, G.; Zeller, G.; Waterston, R.: The C. elegans transcriptome. 18th International C. Elegans Meeting, Los Angeles, CA, USA (2011)

Behr, J.; Zeller, G.; Schweikert, G.; Hartmann, L.; Smith, L.; Rätsch, G.: De Novo RNA-seq-based genome annotation. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Rätsch, G.; Weigel, D.: Transcriptome profiling of RNA-processing mutants: Uncovering the hidden layer of the Arabidopsis transcriptome. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Plantegenet, S.; Weber, J.; Goldstein, D.; Zeller, G.; Nussbaumer, C.; Thomas, J.; Weigel, D.; Harshman, K.; Hardtke, C.: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. 19th International Conference on Arabidopsis Research (ICAR 2008), Montreal, Canada (2008)

Schweikert, G.; Zien, A.; Zeller, G.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.: mGene: A Novel Discriminative Gene Finding System. 15th Annual International Conference on Intelligent Systems for Molecular Biology, 6th Annual European Conference on Computational Biology (ISMB/ECCB 2007), Wien, Austria (2007)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Warthmann, N.; Shinn, P.; Frazer, K.; Ecker, J.; Huson, D.; Weigel, D. et al.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Clark, R.; Ossowski, S.; Schweikert, G.; Zeller, G.; Shinn , P.; Rätsch, G.; Warthmann, N.; Fu, G.; Hinds, D.; Cheng, H. et al.; Frazer, K.; Toomajian, C.; Hu, T.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.: An Inventory of Common Sequence Polymorphisms for Arabidopsis. 17th International Conference on Arabidopsis Research (ICAR 2006), Madison, WI, USA (2006)

Zeller, G.; Görnitz, N.; Kahles, A.; Behr, J.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTim: rapid and accurate transcript reconstruction from RNA-Seq data. (submitted)