Publications

1.

Journal Article

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinformatics 30 (9), pp. 1300 - 1301 (2014)

2.

Meeting Abstract

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: a multifunctional workbench for RNA-seq data analysis. In BMC Bioinformatics, 15 (Supplement 13), A7. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany, July 19, 2013. BioMed Central (2014)

3.

Meeting Abstract

Schultheiss, S.; Jean, G.; Sreedharan, V.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Easier Workflows & Tool Comparison with Oqtans+. In Galaxy Community Conference 2012 (GCC 2012). Galaxy Community Conference 2012 (GCC 2012), Chacago, IL, USA, July 25, 2012 - July 27, 2012. (2012)

4.

Meeting Abstract

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011 at ISMB/ECCB 2011, Wien, Austria, July 15, 2011. BioMed Central (2011)

5.

Poster

Görnitz, N.; Zeller, G.; Behr, J.; Kahles, A.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTIM: A Margin-based Transcript Identification Method. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany (2014)

6.

Poster

Sreedharan, V.; Schultheiss, S.; Jean, G.; Kahles, A.; Bohnert, R.; Drewe, P.; Mudrakarta, P.; Görnitz, N.; Zeller, G.; Rätsch, G.: Oqtans: a multifunctional workbench for RNA-seq data analysis. 14th Annual Bioinformatics Open Source Conference (BOSC 2013), Berlin, Germany (2013)

7.

Preprint

Zeller, G.; Görnitz, N.; Kahles, A.; Behr, J.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTim: rapid and accurate transcript reconstruction from RNA-Seq data. (submitted)