Publications of A Zien

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Binder, A.; Gehl, C.; Franc, V.: The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 11, pp. 1799 - 1802 (2010)

Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), pp. 2133 - 2143 (2009)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), pp. W312 - W316 (2009)

Jenssen, R.; Kloft, M.; Sonnenburg, S.; Zien, A.; Müller, K.-R.: A new scatter-based multi-class support vector machine. In: 2011 IEEE International Workshop on Machine Learning for Signal Processing (Ed. Tan, T.). IEEE International Workshop on Machine Learning for Signal Processing (MLSP 2011), Beijing, China, September 18, 2011 - September 21, 2011. IEEE, Piscataway, NJ, USA (2011)

Kloft, M.; Brefeld, U.; Sonnenburg, S.; Laskov, P.; Müller, K.-R.; Zien, A.: Efficient and Accurate Lp-Norm Multiple Kernel Learning. In: Advances in Neural Information Processing Systems 22, pp. 997 - 1005 (Eds. Bengio, Y.; Schuurmans, D.; Lafferty, J.; Williams, C.; Culotta, A.). 23rd Annual Conference on Neural Information Processing Systems (NIPS 2009), Vancouver, BC, Canada, December 07, 2009 - December 10, 2009. Curran, Red Hook, NY, USA (2010)

Zien, A.; Krämer, N.; Sonnenburg, S.; Rätsch, G.: The Feature Importance Ranking Measure. In: Machine Learning and Knowledge Discovery in Databases: European Conference, ECML PKDD 2009, Bled, Slovenia, September 7-11, 2009, Proceedings, Part II, pp. 694 - 709 (Eds. Buntine, W.; Grobelnik, M.; Mladenić, D.; Shawe-Taylor, J.). 16th European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2009), Bled, Slovenia, September 07, 2009 - September 11, 2009. Springer, Berlin, Germany (2009)

Ong, C.; Zien, A.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, pp. 186 - 197 (Eds. Krandall, K.; Lagergren, J.). 8th Workshop on Algorithms in Bioinformatics (WABI 2008), Karlsruhe, Germany, September 15, 2008 - September 19, 2008. Springer, Berlin, Germany (2008)

Sonnenburg, S.; Zien, A.; Philips, P.; Rätsch, G.: POIMs: positional oligomer importance matrices: understanding support vector machine-based signal detectors. 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. Bioinformatics 24 (13), pp. i6 - i14 (2008)

Zien, A.; Brefeld, U.; Scheffer, T.: Transductive Support Vector Machines for Structured Variables. In: ICML '07: 24th International Conference on Machine Learning, pp. 1183 - 1190 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Zien, A.; De Bona, F.; Ong, C.: Training and Approximation of a Primal Multiclass Support Vector Machine. In: XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), 1 (Ed. Skiadas, C.). XIIth International Conference on Applied Stochastic Models and Data Analysis (ASMDA 2007), Chania, Greece, May 29, 2007 - June 01, 2007. (2007)

Zien, A.; Ong, C.: Multiclass Multiple Kernel Learning. In: ICML '07: 24th International Conference on Machine Learning, pp. 1191 - 1198 (Ed. Ghahramani, Z.). 24th International Conference on Machine Learning (ICML 2007), Corvallis, OR, USA, June 20, 2007 - June 24, 2007. ACM Press, New York, NY, USA (2007)

Sonnenburg, S.; Zien, A.; Rätsch, G.: ARTS: Accurate Recognition of Transcription Starts in Human. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, August 06, 2006 - August 10, 2006. Bioinformatics 22 (14), H-56, pp. e472 - e480 (2006)

Zien, A.; Quinonero Candela, J.: Large Margin Non-Linear Embedding. In: ICML '05: 22nd international conference on Machine learning, pp. 1065 - 1072 (Eds. Dzeroski, S.; de Raedt, L.; Wrobel, S.). 22nd International Conference on Machine Learning (ICML 2005), Bonn, Germany, August 07, 2005 - August 11, 2005. ACM Press, New York, NY, USA (2005)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Gehl, C.; Binder, A.; Franc, V.: SHOGUN: A Large Scale Machine Learning Toolbox. In The R User Conference 2010, useR! 2010, p. 154. International R User Conference (useR! 2010), Gaithersburg, MD, USA, July 21, 2010 - July 23, 2010. (2010)

Zien, A.: Mathematical programming for multiple kernellearning. In 23rd European Conference on Operational Research (Euro XXIII), TD-18-1, p. 187. 23rd European Conference on Operational Research (Euro XXIII), Bonn, Germany, July 05, 2009 - July 08, 2009. (2009)

Zien, A.: Mathematical programming for multiple kernel learning. In 23rd European Conference on Operational Research (EURO XXIII). 23rd European Conference on Operational Research (EURO XXIII) , Bonn, Germany, July 05, 2009 - July 08, 2009. (2009)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), p. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Zien, A.; Ong, C.: An Automated Combination of Kernels for Predicting Protein Subcellular Localization. In NIPS 2007 Workshop: Machine Learning in Computational Biology (MLCB 2007). NIPS 2007 Workshop: Machine Learning in Computational Biology (MLCB 2007), Whistler, Canada, December 07, 2007 - December 08, 2007. (2007)

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.: mGene: A Novel Discriminative Ab-initio Gene Finding System. In Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, pp. 36 - 37. Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, Wien, Austria, July 19, 2007 - July 20, 2007. (2007)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Franc, V.; Philips, P.; Rätsch, G.: Bioinformatics (Past, Current and Future Projects). IDA Retreat (2009)