Publications of S Sonnenburg

Rätsch, G.; Sonnenburg, S.: Large Scale Hidden Semi-Markov SVMs. In: Advances in Neural Information Processing Systems 19, pp. 1161 - 1168 (Eds. Schölkopf, B.; Platt, J.; Hoffman, T.). Twentieth Annual Conference on Neural Information Processing Systems (NIPS 2006), Vancouver, BC, Canada, December 04, 2006 - December 07, 2006. MIT Press, Cambridge, MA, USA (2007)

Sonnenburg, S.; Zien, A.; Rätsch, G.: ARTS: Accurate Recognition of Transcription Starts in Human. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil, August 06, 2006 - August 10, 2006. Bioinformatics 22 (14), H-56, pp. e472 - e480 (2006)

Sonnenburg, S.; Rätsch, G.; Schäfer, C.: A General and Efficient Multiple Kernel Learning Algorithm. In: Advances in Neural Information Processing Systems 18, Vol. 18, pp. 1273 - 1280 (Eds. Saul, L.; Schölkopf, B.; Platt, J.). Nineteenth Annual Conference on Neural Information Processing Systems (NIPS 2005), Vancouver, BC, Canada, December 05, 2005 - December 08, 2005. MIT Press, Cambridge, MA, USA (2006)

Rätsch, G.; Sonnenburg, S.; Schäfer, C.: Learning interpretable SVMs for biological sequence classification. NIPS Workshop on New Problems and Methods in Computational Biology, Whistler, Canada, December 08, 2004. BMC Bioinformatics 7 (Supplement 1), S9, (2006)

Sonnenburg, S.; Rätsch, G.; Schölkopf, B.: Large Scale Genomic Sequence SVM Classifiers. In: ICML '05: the 22nd international conference on Machine learning, pp. 848 - 855 (Eds. Dzeroski, S.; de Raedt, L.; Wrobel, S.). 22nd International Conference on Machine Learning (ICML 2005), Bonn, Germany, August 07, 2005 - August 11, 2005. ACM Press, New York, NY, USA (2005)

Rätsch, G.; Sonnenburg, S.; Schölkopf, B.: RASE: recognition of alternatively spliced exons in C.elegans. Thirteenth International Conference on Intelligent Systems for Molecular Biology (ISBM 2005), Detroit, MI, USA, June 25, 2005 - June 29, 2005. Bioinformatics 21 (Supplement 1), pp. i369 - i377 (2005)

Sonnenburg, S.; Rätsch, G.; Schäfer, C.: Learning interpretable SVMs for biological sequence classification. In: Research in Computational Molecular Biology: 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, pp. 389 - 407 (Eds. Miyano, S.; Mesirov, J.; Kasif, S.; Istrail, S.; Pevzner, P. et al.). 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2005), Cambridge, MA, USA, May 14, 2005 - May 18, 2005. Springer, Berlin, Germany (2005)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Gehl, C.; Binder, A.; Franc, V.: SHOGUN: A Large Scale Machine Learning Toolbox. In The R User Conference 2010, useR! 2010, p. 154. International R User Conference (useR! 2010), Gaithersburg, MD, USA, July 21, 2010 - July 23, 2010. (2010)

Rätsch, G.; Sonnenburg, S.; Ong, C.: Support Vector Machines and Kernels for Computational Biology. In 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), AM3. 17th Annual International Conference on Intelligent Systems for Molecular Biology and 8th European Conference on Computational Biology (ISMB/ECCB 2009), Stockholm, Sweden, June 27, 2009 - July 02, 2009. (2009)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), p. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.: mGene: A Novel Discriminative Ab-initio Gene Finding System. In Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, pp. 36 - 37. Automated Function Prediction: Biosapiens Joint Special Interest Group Meeting, Wien, Austria, July 19, 2007 - July 20, 2007. (2007)

Sonnenburg, S.; Rätsch, G.; De Bona, F.: SHOGUN: A Large Scale Machine Learning Toolbox. In 2nd International R User Conference: useR! 2006, p. 155. 2nd International R User Conference: useR! 2006, Wien, Austria, June 15, 2006 - June 17, 2006. (2006)

Sonnenburg, S.: Maschinelles Lernen zur Genom-Sequenzanalyse: Machine Learning for Genomic Sequence Analysis. GI-Symposium, Dagstuhl, Germany (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Franc, V.; Philips, P.; Rätsch, G.: Bioinformatics (Past, Current and Future Projects). IDA Retreat (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Philips, P.; Rätsch, G.: Large Scale Machine Learning for Genomic Sequence Analysis (Support Vector Machine Based Signal Detectors). Eberhard-Karls-Universität, Tübingen, Germany (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Philips, P.; Rätsch, G.: Accurate and Interpretable Large Scale Genomic Signal Detection (Support Vector Machine Based Signal Detectors). Max-Planck-Institut für Molekulare Genetik, Berlin, Germany (2009)

Sonnenburg, S.; Rieck, K.; Rätsch, G.: Large Scale Learning with String Kernels. NIPS 2007 Workshop on Efficient Machine Learning, Whistler, BC, Canada (2007)

Sonnenburg, S.; Zien, A.; Philips, P.; Rätsch, G.: Positional Oligomer Importance Matrices. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, BC, Canada (2007)

Schweikert, G.; Zeller, G.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Phillips, P.; Rätsch, G.: Ab-initio gene finding using machine learning. NIPS 2006 Workshop on New Problems and Methods in Computational Biology (MLCB 2006), Vancouver, BC, Canada (2006)

Rätsch, G.; Sonnenburg, S.; Ong, C.; Schölkopf, B.: Accurate prediction of alternative splicing events. NIPS Workshop on Computational Biology and the Analysis of Heterogeneous Data (MLCB 2005), Whistler, BC, Canada (2005)