Publikationen von J Behr

Steijger, T.; Abril, J.; Engström, P.; Kokocinski, F.; Akerman, M.; Alioto, T.; Ambrosini, G.; Antonarakis, S.; Behr, J.; Bohnert, R. et al.; Bucher, P.; Cloonan, N.; Derrien, T.; Djebali, S.; Du, J.; Dudoit, S.; Gerstein, M.; Gingeras, T.; Gonzalez, D.; Grimmond, S.; Habegger, L.; Iseli, C.; Jean, G.; Kahles, A.; Kokocinski, F.; Lagarde, J.; Leng, J.; Lefebvre, G.; Lewis, S.; Mortazavi, A.; Niermann, P.; Rätsch, G.; Reymond, A.; Ribeca, P.; Richard, H.; Rougemont, J.; Rozowsky, J.; Sammeth, M.; Sboner, A.; Schulz, M.; Searle, S.; Solorzano, N.; Solovyev, V.; Stanke, M.; Steijger, T.; Stevenson, B.; Stockinger, H.; Valsesia, A.; Weese, D.; White, S.; Wold, B.; Wu, J.; Wu, T.; Zeller, G.; Zerbino, D.; Zhang, M.; Hubbard, T.; Guigó, R.; Harrow, J.; Bertone, P.: Assessment of Transcript Reconstruction Methods for RNA-seq. Nature Methods 10 (12), S. 1177 - 1184 (2013)

Behr, J.; Kahles, A.; Zhong, Y.; Sreedharan, V.; Drewe, P.; Rätsch, G.: MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples. Bioinformatics 29 (20), S. 2529 - 2538 (2013)

Gan, X.; Stegle, O.; Behr, J.; Steffen, J.; Drewe, P.; Hildebrand, K.; Lyngsoe , R.; Schultheiss, S.; Osborne, E.; Sreedharan, V. et al.; Kahles, A.; Bohnert, R.; Jean, G.; Derwent, P.; Kersey, P.; Belfield, E.; Harberd, N.; Kemen, F.; Toomajian, C.; Kover , P.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477 (7365), S. 419 - 423 (2011)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Binder, A.; Gehl, C.; Franc, V.: The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 11, S. 1799 - 1802 (2010)

Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), S. 2133 - 2143 (2009)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), S. W312 - W316 (2009)

Sonnenburg, S.; Schweikert, G.; Philips, P.; Behr, J.; Rätsch, G.: Accurate Splice site Prediction Using Support Vector Machines. NIPS 2006 Workshop on New Problems and Methods in Computational Biology, Whistler, Canada, 08. Dezember 2006. BMC Bioinformatics 8 (Supplement 10), S7, (2007)

Schultheiss, S.; Jean, G.; Behr, J.; Bohnert, R.; Drewe, P.; Görnitz, N.; Kahles, A.; Mudrakarta, P.; Sreedharan, V.; Zeller, G. et al.; Rätsch, G.: Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. In BMC Bioinformatics, 12 (Supplement 11), A7. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011 at ISMB/ECCB 2011, Wien, Austria, 15. Juli 2011. BioMed Central (2011)

Behr, J.; Clark, J.; Drewe, P.; Hildebrand, K.; Kover, P.; Lyngsoe, R.; Mott, E.; Osborne, R.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Steffen, J.; Stegle, O.; Toomajian, C.; Xiangchao, G.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. In HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, S. 22. HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, Wien, Austria, 15. Juli 2011 - 16. Juli 2011. (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, S. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, 22. Juni 2011 - 25. Juni 2011. (2011)

Behr, J.; Bohnert, R.; Zeller, G.; Schweikert, G.; Hartmann, L.; Rätsch, G.: Next generation genome annotation with mGene.ngs. In BMC Bioinformatics, 11 (Supplement 10), O8. Sixth International Society for Computational Biology Student Council Symposium (ISCB 2010) , Boston, MA, USA, 09. Juli 2010. BioMed Central (2010)

Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Gehl, C.; Binder, A.; Franc, V.: SHOGUN: A Large Scale Machine Learning Toolbox. In The R User Conference 2010, useR! 2010, S. 154. International R User Conference (useR! 2010), Gaithersburg, MD, USA, 21. Juli 2010 - 23. Juli 2010. (2010)

Bohnert, R.; Behr, J.; Kahles, A.; Jean, G.; Raetsch, G.: Oonline transcriptome analysis http://galaxy.tuebingen.mpg.de. In 2010 Meeting on the Biology of Genomes, S. 257. 2010 Meeting on the Biology of Genomes, Cold Spring Harbor, NY, USA, 11. Mai 2010 - 15. Mai 2010. (2010)

Schweikert, G.; Zeller, G.; Behr, J.; Zien, A.; Ong, C.; De Bona, F.; Sonnenburg, S.; Philips, P.; Rätsch, G.; Widmer, C.: mGene: A Novel Discriminative Gene Finding System. In 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), S. 20. 4th ISCB Student Council Symposium at the 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, 19. Juli 2008 - 23. Juli 2008. (2008)

Behr, J.; Bohnert, R.; Kahles, A.; Rätsch, G.: Simultaneous RNA-seq-based Transcript Inference and Quantification Using Mixed Integer Programming. NIPS 2011 Workshop Machine Learning in Computational Biology , Sierra Nevada, Spain (2011)

Bohnert, R.; Behr, J.; Rätsch, G.: Quantitative Detection of Alternative Transcripts with RNA-Seq Data. ISMB 2009 Special Interest Group on Short Read Sequencing, Stockholm, Sweden (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Franc, V.; Philips, P.; Rätsch, G.: Bioinformatics (Past, Current and Future Projects). IDA Retreat (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Philips, P.; Rätsch, G.: Large Scale Machine Learning for Genomic Sequence Analysis (Support Vector Machine Based Signal Detectors). Eberhard-Karls-Universität, Tübingen, Germany (2009)

Sonnenburg, S.; Zien, A.; Behr, J.; Schweikert, G.; Philips, P.; Rätsch, G.: Accurate and Interpretable Large Scale Genomic Signal Detection (Support Vector Machine Based Signal Detectors). Max-Planck-Institut für Molekulare Genetik, Berlin, Germany (2009)

Görnitz, N.; Zeller, G.; Behr, J.; Kahles, A.; Mudrakarta, P.; Sonnenburg, S.; Rätsch, G.: mTIM: A Margin-based Transcript Identification Method. Ninth International Society for Computational Biology (ISCB) Student Council Symposium 2013, Berlin, Germany (2014)