Publications of YF Chan

Bay, R.; Arnegard, M.; Conte, G.; Best, J.; Bedford, N.; McCann, S.; Dubin, M.; Chan, Y.; Jones, F.; Kingsley, D. et al.; Schluter, D.; Peichel, C.: Genetic coupling of female mate choice with polygenic ecological divergence facilitates stickleback speciation. Current Biology 27 (21), pp. 3344 - 3349 (2017)

Conte, G.; Arnegard, M.; Best, J.; Chan, Y.; Jones, F.; Kingsley, D.; Schluter, D.; Peichel, C.: Extent of QTL Reuse During Repeated Phenotypic Divergence of Sympatric Threespine Stickleback. Genetics 201 (3), pp. 1189 - 1200 (2015)

Arnegard, M.; McGee, M.; Matthews, B.; Marchinko, K.; Conte, G.; Kabir, S.; Bedford, N.; Bergek, S.; Chan, Y.; Jones, F. et al.; Kingsley, D.; Peichel, C.; Schluter, D.: Genetics of ecological divergence during speciation. Nature 511 (7509), pp. 307 - 311 (2014)

Wark, A.; Mills, M.; Dang, L.-H.; Chan, Y.; Jones, F.; Brady, S.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R. et al.; Kingsley, D.; Peichel, C.: Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks. G3: Genes, Genomes, Genetics 2 (9), pp. 1047 - 1056 (2012)

Chan, Y.; Jones, F.; McConnell, E.; Bryk, J.; Bünger, L.; Tautz, D.: Parallel selection mapping using artificially selected mice reveals body weight control loci. Current Biology 22 (9), pp. 794 - 800 (2012)

Deagle, B.; Jones, F.; Chan, Y.; Absher, D.; Kingsley, D.; Reimchen, T.: Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions. Proceedings of the Royal Society B: Biological Sciences 279 (1732), pp. 1277 - 1286 (2012)

Jones, F.; Grabherr, M.; Chan, Y.; Russell, P.; Mauceli, E.; Johnson, J.; Swofford, R.; Pirun, M.; Zody, M.; White, S. et al.; Birney, E.; Searle, S.; Schmutz, J.; Grimwood, J.; Dickson, M.; Myers, R.; Miller, C.; Summers, B.; Knecht, A.; Brady, S.; Zhang, H.; Pollen, A.; Howes, T.; Amemiya, C.; Lander, E.; Di Palma, F.; Lindblad-Toh, K.; Kingsley, D.: The genomic basis of adaptive evolution in threespine sticklebacks. Nature 484 (7392), pp. 55 - 61 (2012)

Jones, F.; Chan, Y.; Schmutz, J.; Grimwood, J.; Brady, S.; Southwick, A.; Absher, D.; Myers, R.; Reimchen, T.; Deagle, B. et al.; Schluter, D.; Kingsley, D.: A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks. Current Biology 22, pp. 83 - 90 (2012)

Greenwood, A.; Jones, F.; Chan, Y.; Brady, S.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R.; Kingsley, D.; Peichel, C.: The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks. Heredity 107 (2), pp. 155 - 166 (2011)

Chan, Y.; Marks, M.; Jones, F.; Villarreal Jr., G.; Shapiro, M.; Brady, S.; Southwick, A.; Absher, D.; Grimwood, J.; Schmutz, J. et al.; Myers, R.; Petrov, D.; Jónsson, B.; Schluter, D.; Bell, M.: Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327 (5963), pp. 302 - 305 (2010)

Kitano, J.; Ross, J.; Mori, S.; Kume, M.; Jones, F.; Chan, Y.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R. et al.; Kingsley, D.; Peichel, C.: A role for a neo-sex chromosome in stickleback speciation. Nature 461 (7267), pp. 1079 - 1083 (2009)

Ullate-Agote, A.; Chan, Y.; Tzika, A.: A step-by-step guide to assemble a reptilian genome. In: Methods in Molecular Biology, Vol. 1650 (Ed. Guojun , S.). Springer, US (2017)

Choo, L.; Le Moan, A.; Pajot, B.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, F.; Butlin, R.: Association of inversion polymorphisms with ecotypes in the flat periwinkle Littorina fabalis. In Population Genetics Group 58, Talk 26, p. 33. Population Genetics Group 58, Sheffield, UK, January 07, 2025 - January 09, 2025. (2025)

Choo, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.; Butlin, R.: Role of inversions in adaptation to wave exposure in the flat periwinkle Littorina fabalis. In Population Genetics Group 57 (PopGroup57), 162, p. 131. Population Genetics Group 57 (PopGroup57), St. Andrews, Scotland, January 08, 2024 - January 10, 2024. (2024)

Evseeva, D.; Pecrix, Y.; Poussier, S.; Wicker, E.; Kucka, M.; Chan, F.; Gopalan-Nair, R.; McCann, H.: Diversification of two-partner secretion systems in the bacterial plant pathogen Ralstonia solanacearum. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 19, p. 14. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Artiushin, I.; Blumer, L.; Burskaia, V.; Saha, J.; Kučka, M.; Chan, Y.; Durbin, R.; Svardal, H.: Chromosome-scale inversions in the Malawi cichlid radiation: widespread and long-lived. In SMBE 2023, p. 523. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Cho, L.; Le Moan, A.; Faria, R.; Johannesson, K.; Kučka, M.; Chan, Y.: Role of chromosomal inversions in adaption and speciation in the flat periwinkle Littorina fabalis. In SMBE 2023, pp. 519 - 520. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)

Hooper, D.; McDiarmid, C.; Powers, M.; Carpenter, A.; Justyn, N.; Kucka, M.; Hart, N.; Hill, G.; Andolfatto, P.; Griffith, S. et al.; Chan, Y.: Selective sweeps on different carotenoid processing genes underlie the divergence in bill color in the long-tailed finch (Poephila acuticauda). In Evolution 2023, 542. Evolution 2023: Joint Annual Meeting of the American Society of Naturalists, the Society for the Study of Evolution, and the Society of Systematic Biologists, Albuquerque, NM, USA, June 21, 2023 - June 25, 2023. (2023)

Liu, Z.; Zuellig, M.; Chan, Y.; Kučka, M.; Saladin, V.; Peichel, C.: The fourspine stickleback (Apeltes quadracus) has an XY sex chromosome system with polymorphic inversions on both X and Y chromosomes. In Swiss Conference on Organismal Biology: Biology 23, p. 50. Swiss Conference on Organismal Biology: Biology 23, Geneva, Switzerland, February 16, 2023 - February 17, 2023. (2023)

Peters, M.; Soltys, V.; Kucka, M.; Chan, Y.: CITR-Seq: A Robust Method to Generate Paired T Cell Receptor Repertoires in Mice. In 2023 Meeting on Systems Immunology, p. 136. 2023 Meeting on Systems Immunology, Cold Spring Harbor, NY, USA, April 18, 2023 - April 23, 2023. (2022)